ChIP-Seq Workflow

The GenomeQuest ChIP-Seq solution provides state-of-the-art tools across the entire workflow, including for alignment, peak modeling, and interactive analysis.  To maximize accuracy, it allows for over 15 key parameters to be set and multiple runs to be stacked and analyzed collectively.  Also, researchers can immediately share and connect their results with other sequence databases, GenomeQuest workflows, and colleagues – preserving and leveraging their work.

GenomeQuest SDM

This comprehensive functionality is delivered in an easy-to-use, integrated environment.  From a web browser, researchers simply upload their database and fill out two forms – one each for alignment and peak modeling.  For the reference databases, users can select from a list of GenomeQuest aggregated and qualified databases with extended annotations.  The hosted environment also includes an interactive sequence browser where researchers interactively query and analyze run results.

“Whereas early adopters necessarily developed their own custom computer code to analyze the first ChIP-Seq and RNA-Seq datasets, a new generation of more sophisticated algorithms and software tools are emerging to assist in the analysis phase of these projects.”  --Nature Methods 2009

Learn more about the GenomeQuest ChIP-Seq Workflow at the GQ help wiki page.

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